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AT3G06430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g06430-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g06430-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Protein Annotations
BioGrid:5152eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011623EMBL:AY099616EMBL:BT006618EMBL:CP002686
EnsemblPlants:AT3G06430EnsemblPlants:AT3G06430.1entrez:819817GeneID:819817GO:GO:0009507GO:GO:0009553GO:GO:0009555
GO:GO:0009793GO:GO:0019843GO:GO:0048868Gramene:AT3G06430.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF301HOGENOM:HOG000239665
InParanoid:Q9SQU6IntAct:Q9SQU6InterPro:IPR002885iPTMnet:Q9SQU6KEGG:ath:AT3G06430OMA:KRHWKAGPaxDb:Q9SQU6
Pfam:PF01535Pfam:PF13041Pfam:Q9SQU6Pfscan:PS51375PhylomeDB:Q9SQU6PRIDE:Q9SQU6PRO:PR:Q9SQU6
PROSITE:PS51375ProteinModelPortal:Q9SQU6Proteomes:UP000006548RefSeq:NP_187294.1SMR:Q9SQU6STRING:3702.AT3G06430.1TAIR:AT3G06430
tair10-symbols:EMB2750TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.40524UniProt:Q9SQU6
Coordinates (TAIR10) chr3:-:1956658..1958240
Molecular Weight (calculated) 55702.40 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.35
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)