AT3G05360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 30 (RLP30); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, signal transduction, response to cyclopentenone, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 11 (TAIR:AT1G71390.1); Has 101325 Blast hits to 29993 proteins in 1145 species: Archae - 37; Bacteria - 7130; Metazoa - 23873; Fungi - 1058; Plants - 61263; Viruses - 2; Other Eukaryotes - 7962 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1530900..1533260 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87532.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 786 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPSQSNSFS GSVITLYFFL LGSLVLRTLA SSRLHYCRHD QRDALLEFKH EFPVSESKPS PSLSSWNKTS DCCFWEGVTC DDESGEVVSL DLSYVLLNNS 101: LKPTSGLFKL QQLQNLTLSD CHLYGEVTSS LGNLSRLTHL DLSSNQLTGE VLASVSKLNQ LRDLLLSENS FSGNIPTSFT NLTKLSSLDI SSNQFTLENF 201: SFILPNLTSL SSLNVASNHF KSTLPSDMSG LHNLKYFDVR ENSFVGTFPT SLFTIPSLQI VYLEGNQFMG PIKFGNISSS SRLWDLNLAD NKFDGPIPEY 301: ISEIHSLIVL DLSHNNLVGP IPTSISKLVN LQHLSLSNNT LEGEVPGCLW GLMTVTLSHN SFNSFGKSSS GALDGESMQE LDLGSNSLGG PFPHWICKQR 401: FLKYLDLSNN LFNGSIPPCL KNSTYWLKGL VLRNNSFSGF LPDVFVNASM LLSLDVSYNR LEGKLPKSLI NCTGMELLNV GSNIIKDTFP SWLVSLPSLR 501: VLILRSNAFY GSLYYDHISF GFQHLRLIDI SQNGFSGTLS PLYFSNWREM VTSVLEENGS NIGTEDWYMG EKGPEFSHSN SMTMIYKGVE TDFLRIPYFF 601: RAIDFSGNRF FGNIPESVGL LKELRLLNLS GNSFTSNIPQ SLANLTNLET LDLSRNQLSG HIPRDLGSLS FLSTMNFSHN LLEGPVPLGT QFQSQHCSTF 701: MDNLRLYGLE KICGKAHAPS STPLESEEFS EPEEQVINWI AAAIAYGPGV FCGLVIGHIF FTAHKHEWFM EKFHRNKRRV VTTSAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)