AT1G71400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
receptor like protein 12 (RLP12); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 11 (TAIR:AT1G71390.1); Has 137756 Blast hits to 35291 proteins in 1265 species: Archae - 48; Bacteria - 8234; Metazoa - 34067; Fungi - 1669; Plants - 82756; Viruses - 14; Other Eukaryotes - 10968 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26909905..26912448 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95289.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 847 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMIRSHRHWV FSSRIIIFLS LLVHSLASSS PHFCRDDQRD ALLEFRGEFP INASWHIMNQ WRGPWNKSTD CCLWNGVTCN DKSGQVISLD IPNTFLNNYL 101: KTNSSLFKLQ YLRHLDLTNC NLYGEIPSSL GNLSHLTLVN LYFNKFVGEI PASIGNLNQL RHLILANNVL TGEIPSSLGN LSRLVNLELF SNRLVGKIPD 201: SIGDLKQLRN LSLASNNLIG EIPSSLGNLS NLVHLVLTHN QLVGEVPASI GNLIELRVMS FENNSLSGNI PISFANLTKL SIFVLSSNNF TSTFPFDMSI 301: FHNLEYFDVS YNSFSGPFPK SLLLIPSLES IYLQENQFTG PIEFANTSSS TKLQDLILGR NRLHGPIPES ISRLLNLEEL DISHNNFTGA IPPTISKLVN 401: LLHLDLSKNN LEGEVPACLW RLNTMVLSHN SFSSFENTSQ EEALIEELDL NSNSFQGPIP YMICKLSSLG FLDLSNNLFS GSIPSCIRNF SGSIKELNLG 501: DNNFSGTLPD IFSKATELVS LDVSHNQLEG KFPKSLINCK ALELVNVESN KIKDIFPSWL ESLPSLHVLN LRSNKFYGPL YHRHASIGFQ SLRIIDISHN 601: NFSGTLPPYY FSNWKDMTTL TEEMDQYMTE FWRYADSYYH EMEMVNKGVD MSFERIRRDF RAIDFSGNKI NGNIPESLGY LKELRVLNLS GNAFTSVIPR 701: FLANLTKLET LDISRNKLSG QIPQDLAALS FLSYMNFSHN LLQGPVPRGT QFQRQKCSSF LDNPGLYGLE DICRDTGALN PTSQLPEDLS EAEENMFNWV 801: AAAIAYGPGV LCGLVIGHFY TSHNHEWFTE KFGRKQHKAL TSVKCSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)