AT3G04890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterized conserved protein (DUF2358) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT2G46100.1); Has 198 Blast hits to 198 proteins in 56 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1347708..1349066 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 24433.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||
| Length | 216 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGVACQISI SSSSTFRRVN QWPRCFSGSP EKKTPAVLKW AVSGVTEFLR LISGAPSSTS IATNKDRSKN EVTAGDVDDV MGILRSDYRN FYFVTGVLTS 101: AIYSDDCIFE DPTISFQGTE LYERNLKLLV PFLEDASIEL QNMEKSESSQ RNYILATWKL RTYLKLPWRP LISINGNTVY DLDKDFKIVR HVESWNVSAL 201: EAIGQIFTVK SFPFRD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)