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AT3G03610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ELMO/CED-12 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT1G03620.1); Has 825 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 44; Plants - 173; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRXCeggNOG:KOG2998EMBL:AY074513EMBL:AY117162
EMBL:CP002686EnsemblPlants:AT3G03610EnsemblPlants:AT3G03610.1entrez:821208
GeneID:821208Gramene:AT3G03610.1hmmpanther:PTHR12771hmmpanther:PTHR12771:SF25
InterPro:IPR006816KEGG:ath:AT3G03610OMA:QWAQWIAPfam:PF04727
Pfscan:PS51335PhylomeDB:Q8VXW7PROSITE:PS51335Proteomes:UP000006548
RefSeq:NP_566211.1STRING:3702.AT3G03610.1TAIR:AT3G03610UniGene:At.40953
UniProt:Q8VXW7
Coordinates (TAIR10) chr3:+:869479..871687
Molecular Weight (calculated) 37434.60 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.44
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MASATLRRRL HHGDVDGRKY ERYDATDSET LSEPLLGSSS TDNSRNEYIE ERTLEDIWEE ERKRQQVHWT LIFSQLIAQW AQWIAKIVFG SGSLVGRFLS
101: LPTFGQIGTG GRLLPPPLSM LQEERLRNIK RRIEIPFDGS RMEHQDALRQ LWRLAYPQRE LPPLKSELWK EMGWQGTDPS TDFRGGGYIS LENLIFFAKT
201: YPESFQRLLH KQDGTRAEWE YPFAVAGINI SFMLAQMLDL QSGKPSTIAG IRFLGFLEED EMAFDNLYCI AFQMMDAQWL ARRASYMEFN DVLKSTRAQL
301: ERELALDDVS SITDLPAFNL LYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)