suba logo
AT3G02000.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.938
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).
Computational
Description (TAIR10)
ROXY1; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G14070.1); Has 1149 Blast hits to 1147 proteins in 188 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 109; Plants - 748; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:5534eggNOG:COG0695eggNOG:KOG1752EMBL:AC010797EMBL:AC011664EMBL:AY910752EMBL:BT024760
EMBL:CP002686EMBL:U63815EnsemblPlants:AT3G02000EnsemblPlants:AT3G02000.1entrez:820200Gene3D:3.40.30.10GeneID:820200
Genevisible:Q96305GO:GO:0005634GO:GO:0005737GO:GO:0009055GO:GO:0015035GO:GO:0045454GO:GO:0045892
GO:GO:0048441GO:GO:0048448GO:GO:0048451Gramene:AT3G02000.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF62HOGENOM:HOG000095204
InParanoid:Q96305IntAct:Q96305InterPro:IPR002109InterPro:IPR011905InterPro:IPR012336KEGG:ath:AT3G02000OMA:PYGGDIQ
PaxDb:Q96305Pfam:PF00462Pfam:Q96305Pfscan:PS51354PhylomeDB:Q96305PRO:PR:Q96305PROSITE:PS51354
ProteinModelPortal:Q96305Proteomes:UP000006548RefSeq:NP_186849.1SMR:Q96305STRING:3702.AT3G02000.1SUPFAM:SSF52833TAIR:AT3G02000
tair10-symbols:ROXY1TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.49586UniProt:Q96305
Coordinates (TAIR10) chr3:-:332512..332922
Molecular Weight (calculated) 14202.50 Da
IEP (calculated) 7.45
GRAVY (calculated) 0.48
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MQYQTESWGS YKMSSLGFGG LGMVADTGLL RIESLASESA VVIFSVSTCC MCHAVKGLFR GMGVSPAVHE LDLHPYGGDI QRALIRLLGC SGSSSPGSLP
101: VVFIGGKLVG AMDRVMASHI NGSLVPLLKD AGALWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)