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AT3G01290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24397334 (2014): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21296373 (2011): mitochondrion
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:19000159 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15276431 (2004): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 7523 Blast hits to 7522 proteins in 1968 species: Archae - 210; Bacteria - 4831; Metazoa - 573; Fungi - 279; Plants - 280; Viruses - 3; Other Eukaryotes - 1347 (source: NCBI BLink).
Protein Annotations
BioGrid:6642eggNOG:COG0330eggNOG:KOG2620EMBL:AC008261EMBL:AC010676EMBL:AY084426EMBL:BT024707
EMBL:CP002686EnsemblPlants:AT3G01290EnsemblPlants:AT3G01290.1entrez:821309GeneID:821309Genevisible:Q9SRH6GO:GO:0005739
GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0009506GO:GO:0016020GO:GO:0050832Gramene:AT3G01290.1
hmmpanther:PTHR10264hmmpanther:PTHR10264:SF90HOGENOM:HOG000035168InParanoid:Q9SRH6IntAct:Q9SRH6InterPro:IPR001107InterPro:IPR001972
iPTMnet:Q9SRH6KEGG:ath:AT3G01290ncoils:CoilOMA:GLLQANNPANTHER:PTHR10264PaxDb:Q9SRH6Pfam:PF01145
Pfam:Q9SRH6PhylomeDB:Q9SRH6PRIDE:Q9SRH6PRO:PR:Q9SRH6ProteinModelPortal:Q9SRH6Proteomes:UP000006548RefSeq:NP_566135.1
SMART:SM00244STRING:3702.AT3G01290.1SUPFAM:0050593SUPFAM:SSF117892SwissPalm:Q9SRH6TAIR:AT3G01290UniGene:At.43760
UniProt:Q9SRH6
Coordinates (TAIR10) chr3:-:88252..89356
Molecular Weight (calculated) 31322.80 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.07
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)