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AT2G45530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.948
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G60580.4); Has 964 Blast hits to 960 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 6; Plants - 589; Viruses - 3; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AC003680EMBL:BT002381EMBL:BT006278EMBL:CP002685EnsemblPlants:AT2G45530
EnsemblPlants:AT2G45530.1entrez:819161Gene3D:3.30.40.10GeneID:819161GO:GO:0008270GO:GO:0016021Gramene:AT2G45530.1
hmmpanther:PTHR23012hmmpanther:PTHR23012:SF82HOGENOM:HOG000029131InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT2G45530OMA:SANESNHPANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292
PhylomeDB:O64633PIR:T00866PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_566045.1SMART:SM00744SMR:O64633
STRING:3702.AT2G45530.1SUPFAM:SSF57850TAIR:AT2G45530TMHMM:TMhelixUniGene:At.48594UniGene:At.70362UniGene:At.75370
unipathway:UPA00143UniProt:O64633
Coordinates (TAIR10) chr2:+:18756604..18757326
Molecular Weight (calculated) 26630.70 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.27
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSSSSSGGD DLEKQQQQQQ KDKSPQKQSE SANESNHLTI VVCNGDSSRE ELVGQIPPEK EVSLSRNGSS HEQCRVCLQD KEEVLIELGC QCRGGLAKAH
101: RSCIDAWFRT KGSNQCEICQ VVAVNVTPPE TQPTTNYWVW RIDPSYRQEE RERGCFSPLW VAFSILIGGL MLDVLISITL GVSALPVNII IGVIVVLGLG
201: TALRLTLEFC YEWSLRRAVH RAVQRAEANN FSNIAYPPAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)