AT2G43040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.368 cytosol 0.332 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
no pollen germination 1 (NPG1); CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: no pollen germination related 2 (TAIR:AT4G28600.1); Has 573 Blast hits to 561 proteins in 155 species: Archae - 29; Bacteria - 89; Metazoa - 223; Fungi - 37; Plants - 141; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17896049..17898524 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77989.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 704 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLGNQSADFS EKGEDEIVRQ LCANGICMKT TEVEAKLDEG NIQEAESSLR EGLSLNFEEA RALLGRLEYQ RGNLEGALRV FEGIDLQAAI QRLQVSVPLE 101: KPATKKNRPR EPQQSVSQHA ANLVLEAIYL KAKSLQKLGR ITEAAHECKS VLDSVEKIFQ QGIPDAQVDN KLQETVSHAV ELLPALWKES GDYQEAISAY 201: RRALLSQWNL DNDCCARIQK DFAVFLLHSG VEASPPSLGS QIEGSYIPRN NIEEAILLLM ILLKKFNLGK AKWDPSVFEH LTFALSLCSQ TAVLAKQLEE 301: VMPGVFSRIE RWNTLALSYS AAGQNSAAVN LLRKSLHKHE QPDDLVALLL AAKLCSEEPS LAAEGTGYAQ RAINNAQGMD EHLKGVGLRM LGLCLGKQAK 401: VPTSDFERSR LQSESLKALD GAIAFEHNNP DLIFELGVQY AEQRNLKAAS RYAKEFIDAT GGSVLKGWRF LALVLSAQQR FSEAEVVTDA ALDETAKWDQ 501: GPLLRLKAKL KISQSNPTEA VETYRYLLAL VQAQRKSFGP LRTLSQMEED KVNEFEVWHG LAYLYSSLSH WNDVEVCLKK AGELKQYSAS MLHTEGRMWE 601: GRKEFKPALA AFLDGLLLDG SSVPCKVAVG ALLSERGKDH QPTLPVARSL LSDALRIDPT NRKAWYYLGM VHKSDGRIAD ATDCFQAASM LEESDPIESF 701: STIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)