AT2G24170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Endomembrane protein 70 protein family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Endomembrane protein 70 protein family; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G10840.1); Has 1577 Blast hits to 1550 proteins in 327 species: Archae - 0; Bacteria - 11; Metazoa - 618; Fungi - 234; Plants - 447; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:10274307..10276894 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73355.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKVRILIFT LVLFFSLNVH IHGFYLPGVA PQDFQMGDAL MVKVNKLTST KTQLPYSYYS LPYCRPEHIV DSAENLGEVL RGDRIENSPF VFKMRESQMC 101: AAVCRVKLDK KTAKAFKEKI ADEYRVNMIL DNLPLVVPVQ RPDQDNVVVY QHGFHVGLKG IFAGKKEEKY FIHNHLTFTV RYHRDIQTDS SRIVGFEVKP 201: FSVKHEYEGQ WNEKARLTTC DPHTKRAVTN SESPQEVEEG NEIIFTYDVD FQESEVKWAS RWDTYLLMAD DQIHWFSIVN SMMIVLFLSG MVAMIMLRTL 301: YRDISNYNQL ESHEEALEET GWKLVHGDVF RPPTNPELLC VYAGTGVQCF GMILVTMIFA CLGFLSPSNR GGLMTAMLLL WVFMGLLAGY ASSRLYKTLR 401: GTEWKRNALK TAFMFPATVF VAFFVLNAII WGQKSSGAVP FGTMFALVVL WFGISVPLVF IGGYIGFRKP APEDPVKTNK IPRQIPTQAW YMNPIFSILI 501: GGILPFGAVF IELFFILTSI WLHQFYYIFG FLFIVFIILI ITCAEITVVL CYFQLCSEDY QWWWRSYLTS GSSAVYLFLY AVFYFYTKLE ITKLVSAVLY 601: FGYMLIVSYV FFVFTGAIGF YACFWFTRLI YSSVKID |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)