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AT2G43010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome interacting factor 4
Curator
Summary (TAIR10)
Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Computational
Description (TAIR10)
phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioGrid:4240DIP:DIP-33903NeggNOG:ENOG410IQ3NeggNOG:ENOG410YAGKEMBL:AC006224EMBL:AF251694EMBL:AF360221
EMBL:AJ440755EMBL:AY142625EMBL:CP002685EMBL:EF193514EMBL:EF193515EMBL:EF193516EMBL:EF193517
EMBL:EF193518EMBL:EF193519EMBL:EF193520EMBL:EF193521EMBL:EF193522EMBL:EF193523EMBL:EF193524
EMBL:EF193525EMBL:EF193526EMBL:EF193527EnsemblPlants:AT2G43010EnsemblPlants:AT2G43010.1entrez:818903ExpressionAtlas:Q8W2F3
Gene3D:4.10.280.10GeneID:818903Genevisible:Q8W2F3GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009585GO:GO:0009704GO:GO:0010017GO:GO:0010161GO:GO:0010244GO:GO:0010600GO:GO:0010928
hmmpanther:PTHR12565InParanoid:Q8W2F3IntAct:Q8W2F3InterPro:IPR011598KEGG:ath:AT2G43010KO:K16189MINT:MINT-7556393
ncoils:CoilOMA:WSFEENYPaxDb:Q8W2F3Pfam:PF00010Pfam:Q8W2F3Pfscan:PS50888PhylomeDB:Q8W2F3
PIR:H84860PRIDE:Q8W2F3PRO:PR:Q8W2F3PROSITE:PS50888ProteinModelPortal:Q8W2F3Proteomes:UP000006548RefSeq:NP_565991.2
SMART:SM00353SMR:Q8W2F3STRING:3702.AT2G43010.1SUPFAM:SSF47459TAIR:AT2G43010tair10-symbols:AtPIF4tair10-symbols:PIF4
tair10-symbols:SRL2UniGene:At.19015UniProt:B9DFT8UniProt:Q8W2F3
Coordinates (TAIR10) chr2:+:17887003..17888823
Molecular Weight (calculated) 48365.60 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.88
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQMQPME
401: MLRFSSPAGQ QSQQPSSVPT KTTDGSRLDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)