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AT2G42110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4RHeggNOG:ENOG410ZHE6EMBL:AC002561EMBL:BT030648
EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G42110EnsemblPlants:AT2G42110.1
entrez:818811GeneID:818811Gramene:AT2G42110.1hmmpanther:PTHR36355
HOGENOM:HOG000029060KEGG:ath:AT2G42110OMA:FGTIEKTPhylomeDB:O23683
PIR:T00921Proteomes:UP000006548RefSeq:NP_181741.1STRING:3702.AT2G42110.1
TAIR:AT2G42110UniGene:At.42748UniProt:O23683
Coordinates (TAIR10) chr2:-:17562234..17562732
Molecular Weight (calculated) 15687.90 Da
IEP (calculated) 11.43
GRAVY (calculated) -0.85
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLVVITETT IPTKITHVNK KSSDELLRKF ADPDDVDESS KSTKRRKKSA KSSSREKGVD IESNTSGLVE RKRLLLAPAS KRRSLFIRQL ASGKSHLRNK
101: SLVRTIGKTW RKTMEGASRV FIEKHYNRHR RLTNDVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)