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AT3G02120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JH0KeggNOG:ENOG41115ZUEMBL:AK118719EMBL:AY088341
EMBL:BT004929EMBL:CP002686EnsemblPlants:AT3G02120EnsemblPlants:AT3G02120.1
entrez:821311GeneID:821311Gramene:AT3G02120.1hmmpanther:PTHR36747
HOGENOM:HOG000005879KEGG:ath:AT3G02120OMA:VSINDSMPhylomeDB:Q8L9N1
Proteomes:UP000006548RefSeq:NP_566161.1STRING:3702.AT3G02120.1TAIR:AT3G02120
UniGene:At.18696UniProt:Q8L9N1
Coordinates (TAIR10) chr3:+:377122..377577
Molecular Weight (calculated) 14150.90 Da
IEP (calculated) 10.82
GRAVY (calculated) -1.04
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MELQQSNLET PLKTQHDHRK ITTSNPESSP PRPFPESSRK HDSPPPRAST NEPMKKIGTP ERLRVPIAFK YPERYRSPTD AMMSPVTKGL LARTRKSSGS
101: LIPPSFNQTK IQELRKPESG LSSVSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)