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AT2G39670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:20423899 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Radical SAM superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 7017 Blast hits to 7011 proteins in 2312 species: Archae - 11; Bacteria - 5106; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1759 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2485-MONOMEReggNOG:COG0820eggNOG:ENOG410IHAGEMBL:AC003674EMBL:AY054250EMBL:AY062813EMBL:BT000060
EMBL:CP002685EnsemblPlants:AT2G39670EnsemblPlants:AT2G39670.1entrez:818550ExpressionAtlas:O48815Gene3D:3.20.20.70GeneID:818550
GO:GO:0005737GO:GO:0008173GO:GO:0030488GO:GO:0051536GO:GO:0070475Gramene:AT2G39670.1HAMAP:MF_01849
hmmpanther:PTHR30544hmmpanther:PTHR30544:SF6HOGENOM:HOG000217991InterPro:IPR004383InterPro:IPR006638InterPro:IPR007197InterPro:IPR013785
InterPro:IPR027492KEGG:ath:AT2G39670KO:K06941PANTHER:PTHR30544Pfam:PF04055PhylomeDB:O48815PIR:A84820
PIRSF:PIRSF006004Proteomes:UP000006548RefSeq:NP_565909.1SMART:SM00729SMR:O48815STRING:3702.AT2G39670.2SUPFAM:SSF102114
TAIR:AT2G39670TIGRfam:TIGR00048TIGRFAMs:TIGR00048UniGene:At.24979UniProt:O48815
Coordinates (TAIR10) chr2:+:16534303..16536986
Molecular Weight (calculated) 47353.40 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.19
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTTTTNTMA MLQNLVFSVP ISRMVVRRHS LATTFSAAAT TVVPSPKPVS AKPARTPHVD SHVLIGMSEP ELQELAINLG QEGYRGKQLH HLIYKRKVNK
101: VEDFSNLPLT FRKGLVDGGF KVGRSPIYQT VTATDGTIKL LLKLEDNLLI ETVGIPVQDD EKGITRLTAC VSSQVGCPLR CSFCATGKGG FSRNLQRHEI
201: IEQVLAIEDV FKHRVTNVVF MGMGEPMLNL KSVLDAHRCL NKDIEIGQRM ITISTVGVPN TIKKLASHKL QSTLAVSLHA PNQSLREKIV PSAKAYPLEA
301: IMKDCRDYFQ ETNRRVSFEY ALLAGVNDQV EHAVELAELL REWGKTYHVN LIPYNPIEGS EYQRPYKKAV LAFAAALESR KITASVRQTR GLDASAACGQ
401: LRNKFQKSPL LTETDSQESQ PDAEAVAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)