AT2G39210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1); Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32; Bacteria - 1223; Metazoa - 36; Fungi - 288; Plants - 601; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16366287..16368231 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66048.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.51 | ||||||||||||||||||||||||||||||||||||
| Length | 601 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAASPGGSM KSLTIQILTG RWFMFFGSLL IMSTAGATYM FGIYSGDIKE TLGYDQTTLN LLSFFKDLGA NVGVLAGLLN EVTPPWFILL IGAILNFFGY 101: FMIWLAVTER ISKPQVWHMC LYICVGANSQ SFANTGSLVT CVKNFPESRG VVLGILKGYV GLSGAIITQL YRAFYGEDTK ELILMIGWLP AIVSFAFLRT 201: IRIMKVKRQT NELKVFYNFL YISLGLATFL MVVIIINKLS GFTQSEFGGS AAVVIVLLLL PIIVVILEEK KLWKEKQVAL NDPAPINVVT EKPKLDSSEF 301: KDDDGEESKE VVEKVKTPSC WTTVFNPPER GDDYTILQAL FSVDMLILFL ATICGVGGTL TAIDNLGQIG NSLGYPKRSV STFVSLVSIW NYYGRVVSGV 401: VSEIFLIKYK FPRPLMLTMV LLLSCAGHLL IAFNVPGGLY VASVIIGFCF GAQWPLLFAI ISEIFGLKYY STLYNFGSVA SPIGSYLLNV RVAGYLYDVE 501: AGKQYKALGK TRVEGQDLNC IGTSCFKLSF IIIAAVTLFG VLVSMVLVIR TKKFYKSDIY KKFREKALAA EMEMAAPAAA RSTVAKEDKD DVKGKVIGKG 601: G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)