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AT2G37790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT2G37770.2); Has 24755 Blast hits to 24730 proteins in 2482 species: Archae - 413; Bacteria - 16802; Metazoa - 2096; Fungi - 1772; Plants - 1239; Viruses - 0; Other Eukaryotes - 2433 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G37790-MONOMEREC:1.1.1.-eggNOG:COG0656eggNOG:KOG1577EMBL:AK227354EMBL:BT005862EMBL:CP002685
EMBL:DQ837655EnsemblPlants:AT2G37790EnsemblPlants:AT2G37790.1entrez:818356Gene3D:3.20.20.100GeneID:818356Genevisible:Q84TF0
GO:GO:0005634GO:GO:0005829GO:GO:0016491Gramene:AT2G37790.1hmmpanther:PTHR11732hmmpanther:PTHR11732:SF223HOGENOM:HOG000250272
InParanoid:Q84TF0InterPro:IPR001395InterPro:IPR018170InterPro:IPR020471InterPro:IPR023210iPTMnet:Q84TF0KEGG:ath:AT2G37790
OMA:TDIPSTWPANTHER:PTHR11732PaxDb:Q84TF0Pfam:PF00248Pfam:Q84TF0PhylomeDB:Q84TF0PIRSF:PIRSF000097
PRIDE:Q84TF0PRINTS:PR00069PRO:PR:Q84TF0PROSITE:PS00062PROSITE:PS00063PROSITE:PS00798ProteinModelPortal:Q84TF0
Proteomes:UP000006548Reactome:R-ATH-156590Reactome:R-ATH-193144Reactome:R-ATH-193368Reactome:R-ATH-193775Reactome:R-ATH-193807Reactome:R-ATH-196108
Reactome:R-ATH-2162123Reactome:R-ATH-5365859Reactome:R-ATH-5652227Reactome:R-ATH-5661270RefSeq:NP_181315.2scanprosite:PS00062scanprosite:PS00063
scanprosite:PS00798SMR:Q84TF0STRING:3702.AT2G37790.1SUPFAM:SSF51430TAIR:AT2G37790UniGene:At.45953UniProt:Q84TF0
Coordinates (TAIR10) chr2:+:15838838..15840752
Molecular Weight (calculated) 34914.90 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.23
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEIRFFEL NTGAKIPSVG LGTWQADPGL VGNAVDAAVK IGYRHIDCAQ IYGNEKEIGL VLKKLFDGGV VKREEMFITS KLWCTYHDPQ EVPEALNRTL
101: QDLQLDYVDL YLIHWPVSLK KGSTGFKPEN ILPTDIPSTW KAMESLFDSG KARAIGVSNF SSKKLADLLV VARVPPAVNQ VECHPSWQQN VLRDFCKSKG
201: VHLSGYSPLG SPGTTWLTSD VLKNPILGGV AEKLGKTPAQ VALRWGLQMG QSVLPKSTHE DRIKQNFDVF NWSIPEDMLS KFSEIGQGRL VRGMSFVHET
301: SPYKSLEELW DGEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)