AT2G34150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SCAR family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SCAR family protein; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT1G29170.1); Has 2566 Blast hits to 1216 proteins in 219 species: Archae - 0; Bacteria - 1126; Metazoa - 472; Fungi - 223; Plants - 222; Viruses - 2; Other Eukaryotes - 521 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14419432..14422361 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78393.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 700 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYDELPPFIM TPYEDCREPP RLHLLDKFDI NGPGSCLKRY SDPTHFKRAS RASKPSEIKK KKSIQRGRDI SRLASVANQS DRKTCTSLSF SGRTSTSKTA 101: STIEIESKSD LQEHRSFSFD SRSGGEKPKR VSSSSRFTPG SRTIASVLSE SESESDSPSQ DLTARGSSSV SWHEKAEIVE CNVLQCATDE APEVMETNFV 201: LDAEPVSRLK EHSAVEAVQD IKPKELEMDN EDETESEGDD FVDALYTIDS ESENDEAFQA TKEVQKNLYN DITEQETEKI SNNFSVDETK CAATSELHLS 301: SSPVYKSDEL IHQDPWAASE ISSGTHSYSN GFSNPLYDIS GIQEHQESEE VESSCDTESI KTWTNGNLLG LKPSKPKIIA ETIPEIVEDI DSETFQEHLR 401: EDYKAPFDWF TSSPPLDHMK ISFKSSETLP SSELQLKLPD EYTFSSFQLV PETIATSLPD SDSDKDTFCR SSSYISDNSD NDNRSVSMSE QQWEEESEGI 501: RESKRQQELY DSFHRVNAEA SSLPVPFPKI ETTNGCLVEN VSYLQNPAEP LPPPLPPLQW MVSKIPSAGF EDNNKQSLKD ALTQAFEKNN NSLTAVKKKE 601: PHIVTVSDPK LVTKVHLKNN VRDYKQSHGN TNETEAGDFL HQIRTKQFNL RRVVRTKTSS SETTMNTNIS VILEKANSIR QAVASDDGEG ESDTWSDSDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)