AT2G23700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.2); Has 867 Blast hits to 688 proteins in 125 species: Archae - 4; Bacteria - 86; Metazoa - 75; Fungi - 16; Plants - 587; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10076624..10079849 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81329.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.35 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||
| Length | 707 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFEDKKMLR QRHKRSKSCT VPEKKKLEDE NSIDSSLDAS QRLKLDLPRC GDKSFEMKKD LSPDVKFKSS LKQEIQELEK RLQNQFDVRG ALEKALGYKT 101: PSRDIKGDST PKPPTELIKE IAVLELEVSH LEQYLLSLYR KAFDQQTSSV SPPTSKQQSS CSPKSTLRGK RLDFSRTPES RCFSFDNRLK SPRLVEKELE 201: SPNLRCRQES LATQPRCFSF DNRLKEPSSA GRQCNQEVSR IDSRSFSFDN RVKEPGSAAR HFNQEDSRID SQCVSFDNRV KEPVSGVRQF DQESSRIDSR 301: CFSFDNRLKD QCFIEKEDID SCVRRCQSSL NQRSTFNNRI SPPEDSVFAC HSQPLSIHEY IQNGSNDASL AEHMGTRISD HIFMTPNKLS EEMIKCASAI 401: YSKLADPPSI NHGFSSPSSS PSSTSEFSPQ DQYDMWSPSF RKNSSFDDQF EFSGPYSSMI EVSHIHRNRK RRDLDLMNRN FSLLLKQLES VDPRKLTHQE 501: KLAFWINVHN ALVMHTFLAN GIPQNNGKRF LLLSKPAYKI GGRMVSLEAI QSYILRIKMP RPGQWLKLLL IPKKFRTGDE HQEYSLEHSE PLLYFALCSG 601: NHSDPAIRVF TPKGIYQELE TAKEEYIRAT FGVKKDQKLV LPKIIESFSK DSGLGQAALM EMIQECLPET MKKTIKKLNS GRSRKSIVEW TPHNFVFRYL 701: IARELVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)