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AT2G33630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (TAIR:AT1G47290.2); Has 15942 Blast hits to 15941 proteins in 2471 species: Archae - 466; Bacteria - 10729; Metazoa - 579; Fungi - 380; Plants - 472; Viruses - 127; Other Eukaryotes - 3189 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G33630-MONOMEReggNOG:COG0451eggNOG:KOG1430EMBL:AC002332EMBL:AF428460EMBL:AY093003EMBL:CP002685
EnsemblPlants:AT2G33630EnsemblPlants:AT2G33630.1entrez:817929Gene3D:3.40.50.720GeneID:817929GO:GO:0003854GO:GO:0005783
GO:GO:0006694GO:GO:0016021Gramene:AT2G33630.1gramene_pathway:1.1.1.170gramene_pathway:PWY66-341hmmpanther:PTHR10366hmmpanther:PTHR10366:SF355
HOGENOM:HOG000168007InterPro:IPR002225InterPro:IPR016040InterPro:IPR028110KEGG:ath:AT2G33630OMA:RDSECFIPfam:PF01073
Pfam:PF14934PhylomeDB:O22813PIR:H84747Proteomes:UP000006548RefSeq:NP_180921.1SMR:O22813STRING:3702.AT2G33630.1
SUPFAM:SSF51735TAIR:AT2G33630TMHMM:TMhelixUniGene:At.48546UniGene:At.64420UniProt:O22813
Coordinates (TAIR10) chr2:-:14236951..14238734
Molecular Weight (calculated) 53438.00 Da
IEP (calculated) 8.89
GRAVY (calculated) 0.09
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MHLSENEGVE GNTFVVTGGL GFVGAALCLE LVRRGARQVR SFDLRHSSPW SDDLKNSGVR CIQGDVTKKQ DVDNALDGAD CVLHLASYGM SGKEMLRFGR
101: CDEVNINGTC NVLEAAFKHE ITRIVYVSTY NVVFGGKEIL NGNEGLPYFP LDDHVDAYSR TKSIAEQLVL KSNGRPFKNG GKRMYTCAIR PAAIYGPGED
201: RHLPRIVTLT KLGLALFKIG EPSVKSDWIY VENLVLAIIL ASMGLLDDIP GREGQPVAAG QPYFVSDGYP VNTFEFLRPL LKSLDYDLPK CTISVPFALS
301: LGKIFQGFYT VLYPWLSKSW LPQPLVLPAE VYKVGVTHYF SYLKAKEELG YVPFKSSKEG MAATISYWQE RKRRSLDGPT MFTWIAVTIG MSALFAAGWL
401: PDIGPVPFLR AIHLFFFRTI TIVKAVFIVA VVLHVAEGIY AWFLAKRVDP GNAMGWFLQT SALGFFSMRF LLKRAKEHQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)