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AT2G30340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LOB domain-containing protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 13 (LBD13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 15 (TAIR:AT2G40470.1); Has 7621 Blast hits to 4763 proteins in 393 species: Archae - 10; Bacteria - 557; Metazoa - 1967; Fungi - 731; Plants - 2819; Viruses - 582; Other Eukaryotes - 955 (source: NCBI BLink).
Protein Annotations
BioGrid:2933eggNOG:ENOG410JC4EeggNOG:ENOG41115IFEMBL:AB473843EMBL:AC002338EMBL:AF345338EMBL:AF447888
EMBL:BT026052EMBL:CP002685EnsemblPlants:AT2G30340EnsemblPlants:AT2G30340.1entrez:817584GeneID:817584Genevisible:Q9AT61
GO:GO:0016020Gramene:AT2G30340.1hmmpanther:PTHR31301hmmpanther:PTHR31301:SF28HOGENOM:HOG000237548InParanoid:Q9AT61IntAct:Q9AT61
InterPro:IPR004883KEGG:ath:AT2G30340ncoils:CoilOMA:DILRHKYPaxDb:Q9AT61Pfam:PF03195Pfam:Q9AT61
Pfscan:PS50891PhylomeDB:Q9AT61PIR:C84707PRIDE:Q9AT61PRO:PR:Q9AT61PROSITE:PS50891ProteinModelPortal:Q9AT61
Proteomes:UP000006548RefSeq:NP_850141.1STRING:3702.AT2G30340.1TAIR:AT2G30340tair10-symbols:LBD13UniGene:At.12242UniProt:Q9AT61
Coordinates (TAIR10) chr2:-:12931306..12932540
Molecular Weight (calculated) 29092.30 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.45
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV
101: GESQRGDAAN SLVYEANLRL RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS CDQHALASAI LLPPPPPPPP
201: TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT NSMYNPPPSS TAGYSNSLSS DNNVHYFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)