suba logo
AT2G29180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J37VeggNOG:ENOG4111EE5EMBL:AC004561EMBL:AK118151
EMBL:BT005708EMBL:CP002685EnsemblPlants:AT2G29180EnsemblPlants:AT2G29180.1
entrez:817467GeneID:817467GO:GO:0009535GO:GO:0016021
Gramene:AT2G29180.1hmmpanther:PTHR36735hmmpanther:PTHR36735:SF1HOGENOM:HOG000005734
KEGG:ath:AT2G29180OMA:NFRPRFQPhylomeDB:Q9ZW05PIR:D84693
Proteomes:UP000006548RefSeq:NP_180481.1STRING:3702.AT2G29180.1TAIR:AT2G29180
TMHMM:TMhelixUniGene:At.28148UniGene:At.48528UniProt:Q9ZW05
Coordinates (TAIR10) chr2:+:12543081..12543702
Molecular Weight (calculated) 18601.40 Da
IEP (calculated) 10.56
GRAVY (calculated) -0.25
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATTTPSLS LSNFRPRFQT PVKGHHISPL SWSVSRRKIL SFRVLRLHQE KTQLWRVSAT PEEISQEIVS SDSSSSSGAV VSSGGQDGVA LIIQVLLFVA
101: FLALTVLTIG VVYIGVTEFL GKREREKFEK DEAAKKSKKG GKKKAMRARA GPRGFGQKIE DDDIDIDLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)