AT1G63580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Receptor-like protein kinase-related family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a plasma membrane-localized protein with two DUF26 domains and a GPI anchor domain. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Receptor-like protein kinase-related family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT1G63590.1); Has 1351 Blast hits to 1292 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:23577333..23578254 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30351.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.47 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 273 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRIIDVSLF CFFLFSLGAM SQPSQNLTDC NQFPDTYQSN RNTVLSTLRN HSSLGSYYFN ATAGLSPNTV YGMFLCIGNI SKTSCSNCVH SATLEMDKSC 101: ESHDTSFMFS DECMVRYSDN SFFSLVEDSP ATFSYSQNDS LSYPQFYNQT LPGKLDELIL KAPSSFSSPV PYFVEDKEHV TQVEGSYDLE AMAQCSPDLD 201: PSSCTVCLGL VVEKFSECCS QSRWARIHFP KCLLRYDISA LQPNLTSLGV TTKGDDIFGR TFIAIMIGLL MGL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)