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AT2G18940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.827
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 70772 Blast hits to 15680 proteins in 317 species: Archae - 4; Bacteria - 89; Metazoa - 1190; Fungi - 1125; Plants - 65689; Viruses - 0; Other Eukaryotes - 2675 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC003673EMBL:AY056798EMBL:BT010749EMBL:CP002685EnsemblPlants:AT2G18940
EnsemblPlants:AT2G18940.1entrez:816411Gene3D:1.25.40.10GeneID:816411Genevisible:O64624GO:GO:0009507Gramene:AT2G18940.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF343HOGENOM:HOG000241317InParanoid:O64624InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G18940
KO:K17710OMA:LANFKCRPaxDb:O64624Pfam:O64624Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:PF13812Pfscan:PS51375PhylomeDB:O64624PIR:T01622PRIDE:O64624PRO:PR:O64624PROSITE:PS51375
ProteinModelPortal:O64624Proteomes:UP000006548RefSeq:NP_179484.1SMR:O64624STRING:3702.AT2G18940.1SUPFAM:SSF81901TAIR:AT2G18940
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.26294UniProt:O64624
Coordinates (TAIR10) chr2:-:8203873..8206341
Molecular Weight (calculated) 92243.60 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.22
Length 822 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)