AT2G14080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 59112 Blast hits to 27121 proteins in 1046 species: Archae - 26; Bacteria - 3020; Metazoa - 5754; Fungi - 417; Plants - 46550; Viruses - 22; Other Eukaryotes - 3323 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5925225..5929600 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 137925.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1215 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDFYVFLGTV AATFFTLLGT IFYMIYGKFR VQETIITTSS SPPTSPQSSL SCNQKHDVFP SFHGADVRKS FLSHILKEFK RKGIDTFIDN NIERSKSIGP 0101: ELIEAIKGSK IAVVLLSKDY ASSSWCLNEL VEIMKCRKML DQTVMTIFYE VDPTDVKKQT GDFGKVFKKT CMGKTNAVSR KWIEALSEVA TIAGEHSINW 0201: DTEAAMIEKI STDISNKLNN STPLRDFDGL VGMGAHMEKL ELLLCLDSCE VRMIGIWGPP GIGKTTIVRF LYNQLSSSFE LSIFMENIKT MHTILASSDD 0301: YSAKLILQRQ FLSKILDHKD IEIPHLRVLQ ERLYNKKVLV VLDDVDQSVQ LDALAKETRW FGPRSRILIT TQDRKLLKAH RINNIYKVDL PNSDDALQIF 0401: CMYAFGQKTP YDGFYKLARK VTWLVGNFPL GLRVVGSYFR EMSKQEWRKE IPRLRARLDG KIESVLKFSY DALCDEDKDL FLHIACFFNH ESIEKLEDFL 0501: GKTFLDIAQR FHVLAEKSLI SINSNFVEMH DSLAQLGKEI VRKQSVREPG QRQFLVDARD ISEVLADDTA GGRSVIGIYL DLHRNDDVFN ISEKAFEGMS 0601: NLQFLRVKNF GNLFPAIVCL PHCLTYISRK LRLLDWMYFP MTCFPSKFNP EFLVELNMWG SKLEKLWEEI QPLRNLKRMD LFSSKNLKEL PDLSSATNLE 0701: VLNLNGCSSL VELPFSIGNA TKLLKLELSG CSSLLELPSS IGNAINLQTI DFSHCENLVE LPSSIGNATN LKELDLSCCS SLKELPSSIG NCTNLKKLHL 0801: ICCSSLKELP SSIGNCTNLK ELHLTCCSSL IKLPSSIGNA INLEKLILAG CESLVELPSF IGKATNLKIL NLGYLSCLVE LPSFIGNLHK LSELRLRGCK 0901: KLQVLPTNIN LEFLNELDLT DCILLKTFPV ISTNIKRLHL RGTQIEEVPS SLRSWPRLED LQMLYSENLS EFSHVLERIT VLELSDINIR EMTPWLNRIT 1001: RLRRLKLSGC GKLVSLPQLS DSLIILDAEN CGSLERLGCS FNNPNIKCLD FTNCLKLDKE ARDLIIQATA RHYSILPSRE VHEYITNRAI GSSLTVKLNQ 1101: RALPTSMRFK ACIVLADNGG REAGNEGRME VYMTIMERQN DFITSTYVSL NHIFPEFLRE HMYTVEVLVD VEVTSDELVF DFQLNSEKWE IGECGVLELK 1201: NHVQTFSEID SWDNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)