AT1G56520.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.810 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1); Has 16802 Blast hits to 12753 proteins in 523 species: Archae - 12; Bacteria - 1032; Metazoa - 1160; Fungi - 60; Plants - 14137; Viruses - 16; Other Eukaryotes - 385 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:21175614..21178920 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101819.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 897 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSPRN WRYNVFTSFH GPDVRIKFLS HLRQQFIYNG ITMFDDNGIE RSQIIAPALK KAIGESRIAI LLLSKNYASS SWSLDELLEI LKCKEDIGQI 101: VMTVFYEVDP SDVRNQTGDF GIAFKETCAH KTEEERQKWT QALTYVGNIA GEDFKHWPNE AKMIEKIARD VSDILNVTPC RDFDGMVGLN DHLREMESLL 201: DLKNDGVKIV GISGPAGIGK STIATALHGR LSNMFQRTCF VDNLRESYKI GLDEYRLKLH LQQQLLAYVL NQDKIRVGHL SVMKERLDDL RVLIILDDVE 301: HLYQLEALAD IRWFGPGSRV IVTTENREIL LQHGIKDIYH VGFPSEGEAL MIFCLSAFRQ PSPPYGFLKL TYEVASICGN LPLGLHVLGT LLWGKSQADW 401: IEELPRLKDC LDGRIESVLK VGYESLYEKD QALFLLIAVY FNYDYVDYVT SMLENTNVLD VRLGLKKLAN RCLIQIDIDH NRKSRVVMNR LLQVMAREVI 501: SKQKISKRKI LEDPQDICYV LEEAKGKGSA LGLSLDVAEI KELVINKKAF KKMCNLLILK VFNGTDPRDS KLHVPEEMEL PSSIRLLHWE AYPRKSFRFG 601: PENLVTLNME YSELEKLWKG TQPLANLKEM NLCGSSCLKE LPDLSKAANL ERLDVAECNA LVEIPSSVAN LHKIVNLHME SCESLEVIPT LINLASLKII 701: NIHDCPRLKS FPDVPTSLEE LVIEKTGVQE LPASFRHCTG VTTLYICSNR NLKTFSTHLP MGLRKLDLSN CGIEWVTDSI KDLHNLYYLK LSGCKRLVSL 801: PELPCSLECL FAEDCTSLER VSDSLNIPNA QFNFIKCFTL DREARRAIIQ QSFVHGNVIL PAREVLEEVD YRARGNCLTI PPSAFNRFKV CVVLSIH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)