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AT2G13610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.743
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT1G53270.1); Has 407800 Blast hits to 367819 proteins in 4141 species: Archae - 7220; Bacteria - 321377; Metazoa - 9869; Fungi - 7399; Plants - 5931; Viruses - 18; Other Eukaryotes - 55986 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1131eggNOG:KOG0061EMBL:AC007063EMBL:AK220826EMBL:AY039972EMBL:AY133881EMBL:CP002685
EnsemblPlants:AT2G13610EnsemblPlants:AT2G13610.1entrez:815846Gene3D:3.40.50.300GeneID:815846Genevisible:Q9SIT6GO:GO:0005524
GO:GO:0005886GO:GO:0016021GO:GO:0042626GO:GO:0055085Gramene:AT2G13610.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF230
HOGENOM:HOG000238446InParanoid:Q9SIT6InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417
KEGG:ath:AT2G13610OMA:GCEIEALPaxDb:Q9SIT6Pfam:PF00005Pfam:PF01061Pfam:Q9SIT6Pfscan:PS50893
PhylomeDB:Q9SIT6PIR:A84509PRIDE:Q9SIT6PRO:PR:Q9SIT6PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9SIT6
Proteomes:UP000006548RefSeq:NP_178984.1scanprosite:PS00211SMART:SM00382SMR:Q9SIT6STRING:3702.AT2G13610.1SUPFAM:SSF52540
TAIR:AT2G13610TMHMM:TMhelixUniGene:At.14323UniProt:Q9SIT6
Coordinates (TAIR10) chr2:-:5673827..5675776
Molecular Weight (calculated) 73318.60 Da
IEP (calculated) 9.08
GRAVY (calculated) 0.07
Length 649 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKQGCEIEA LDIDYNIFVR KINVNPFGIF RRKPRPEADQ PVKTEEESLK LEDETGNKVK HVLKGVTCRA KPWEILAIVG PSGAGKSSLL EILAARLIPQ
101: TGSVYVNKRP VDRANFKKIS GYVTQKDTLF PLLTVEETLL FSAKLRLKLP ADELRSRVKS LVHELGLEAV ATARVGDDSV RGISGGERRR VSIGVEVIHD
201: PKVLILDEPT SGLDSTSALL IIDMLKHMAE TRGRTIILTI HQPGFRIVKQ FNSVLLLANG STLKQGSVDQ LGVYLRSNGL HPPLHENIVE FAIESIESIT
301: KQQRLQESRR AAHVLTPQTT LQEKRSEDSQ GESKSGKFTL QQLFQQTRVA DVGTMNIATE FTRDFANSRL EETMILTHRF SKNIFRTKEL FACRTVQMLG
401: SGIVLGLIFH NLKDDLKGAR ERVGLFAFIL TFLLTSTIEA LPIFLQEREI LMKETSSGSY RVSSYAVANG LVYLPFLLIL AILFSTPVYW LVGLNPSFMA
501: FLHFSLLIWL ILYTANSVVV CFSALVPNFI VGNSVISGVM GSFFLFSGYF ISNHEIPGYW IFMHYISLFK YPFEGFLINE FSKSNKCLEY GFGKCLVTEE
601: DLLKEERYGE ESRWRNVVIM LCFVLLYRFI SYVILRCRCS QRSFKTTLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)