AT3G06880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.863 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: binding, nucleotide binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); Has 7353 Blast hits to 5681 proteins in 353 species: Archae - 6; Bacteria - 1399; Metazoa - 2529; Fungi - 1761; Plants - 818; Viruses - 0; Other Eukaryotes - 840 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2169899..2175686 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141418.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1261 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAYLSSSQST FISCSENSSL DSILVSINVY ILGVISDPEA WISLKQKCIT LLSIEEDNTL FEFSSEHSAL SNLYWGIDSI EASIHPECSE EKTSRLRNSE 0101: RMLQMPALLD EQGTTTSGVP NTVLISFSYF YLSIVSYLQG DSLQSTLHFL QSVLVSPEIV RTDIAPELCE SIFFTPGVYK SDEEIREIAR KYKYRATYYQ 0201: VMSYGETHQP PRECIETPVR RQKEYGQEIF AANAHSVAEK LELSETCEKL LQYQNLHSVD LQEEELNDIF NKIKASRKIE KSENNFEGSQ CLDCNLQEDY 0301: NAEPGKSTRV RCLNEFLNES QPDTREDIGT DTLANIFCVS QQQAHKEANK AYNEDTLANR SSSFIGNFNR SIFEIQAQQS KTTWNTHLED ASSLRQLDLE 0401: EISVFGQKGS ISFEGMRRNL QTKKRGNGLE TLSRRAPTMD LWMNLQSLIK EVLGNADEKY VSEVTMIYQM LNRKEGFKYS MLKDVILDQL FTAISSSEEK 0501: TVIKASMTAL TKIISVNRTA LEEVKRKGLN LSHLANALKQ NVQEAAILIY LIKPSPTEIK SLELLPALVD VVASTSSSSS CYTFIPSPSY LTPPAASLMI 0601: IEVLITAFDH ATNTMHLAAI SSPSVLCGLL DVAKSGNSGE FISLTSILVK CMQFDGLHRK YIYQHTRVAP FAHLLQSKDQ EEICIALQFL HEVLKIPRSS 0701: AIKILQQIKK EGSFDIKVTL LHCIKHLQGD HKLFAADILL QLNALDSPPE NKKYRNEATR ALLDAVTYSE GSNMQLLSTF ILANIGGTYS WTGEPYTAAW 0801: LMKRGGLTSM SHMNMIRNIN WSDECLQDTG IDGWCCKIAR RIIDTGKATF CGLQEGLKSK NKSVSKACLI AIAWLSIEIS KGPNSLKYSA CEVLLDEVAQ 0901: FLHPGLELEE RLLACICIYN FSSGKGIHKL VNFSEGVRES LRRLSHVTWM ADELHKATYY LFSKSDQRIS CVHTQTVEMH QSGSGAVTAL IYHKGLLFSG 1001: FSDGSIRVWN VNKKIATLLW DIKEHKSTVT CFSLSETGEC VLSGSADKTI RVWQIVKGKL ECAEVIKTKD SIRKLEAFGN MIFVITKGHK MKLLDSSRIS 1101: QSIFKGKGVK SMVSAQGKIY IGCIDTSIQE LIVANKREKE IKAPTRSWRL QNKPINSVVV YKDMLYSSST YVEMSNIKDL RRNYEPQMSI TAEKGSNIVA 1201: MGVVEDFIYL NRSSSANTLQ IWLRRTQQKV GRLSAGSKIT SLLTANDIVF CGTEAGLMDP F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)