suba logo
AT1G76270.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 0.823
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 844 Blast hits to 841 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 842; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGFBeggNOG:ENOG410ZGHXEMBL:AY050886EMBL:BT000994EMBL:CP002684EnsemblPlants:AT1G76270EnsemblPlants:AT1G76270.1
entrez:843960GeneID:843960GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016757Gramene:AT1G76270.1
hmmpanther:PTHR31818hmmpanther:PTHR31818:SF1HOGENOM:HOG000240134IntAct:Q949U4InterPro:IPR019378InterPro:IPR024709KEGG:00514+2.4.1.221
KEGG:ath:AT1G76270OMA:HTSINIGPfam:PF10250PhylomeDB:Q949U4PIRSF:PIRSF009360Proteomes:UP000006548RefSeq:NP_565129.1
SwissPalm:Q949U4TAIR:AT1G76270TMHMM:TMhelixUniGene:At.24286UniGene:At.48378unipathway:UPA00378UniProt:Q949U4
Coordinates (TAIR10) chr1:-:28613554..28616537
Molecular Weight (calculated) 65585.00 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.61
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFHRRRYPY YNRLRRLLPL VIAVSLSLLI LFAFLSFLAP PPGDSDRLPP RVRYSSNDAI KATGFHIPRA GGRSDRDIWR SRNAEFFFGC SNASSKFANS
101: KAVTRNDRYL VIATSGGLNQ QRTGIVDAVV AARILNATLV VPKLDQKSYW KDASDFSHIF DVDWFISFLS GDVRIIKQLP LKGGRTWSTS RMRVPRKCNE
201: RCYINRVLPV LLKRHAVQLN KFDYRLSNKL SDDLQKLRCR VNYHALKFTD PILTMGNELV RRMRLRSKHF IALHLRYEPD MLAFSGCYYG GGDKERRELA
301: AIRRRWKTLH INNPEKQRRQ GRCPLTPEEV GLMLRALGYG SDVHIYVASG EVYGGEESLA PLKALFPHFY SKDTIATKEE LEPFSSYSSR MAALDFLVCD
401: ESDVFVTNNN GNMAKILAGR RRYLGHKPTV RPNAKKLYRL FMNKENTTWE EFSSKVRSFQ RGFMGEPKEV RAGRGEFHEN PSTCICEDTE AKAKAQLESR
501: KLGKKNKSTN KDAAVTVTND DQTEEDDPDW SEPDYEEEQS DLQDRGLYNG TSLDYDDPST SDEPELEAML SD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)