AT1G74350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Intron maturase, type II family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, shoot apex, stem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase) (TAIR:AT5G04050.1); Has 3669 Blast hits to 3587 proteins in 1202 species: Archae - 32; Bacteria - 2608; Metazoa - 4; Fungi - 43; Plants - 874; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27949022..27951283 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85010.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 753 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKETGMFS LAGELASLVE ESSSHVDDDS KPRSRMELKR SLELRLKKRV KEQCINGKFS DLLKKVIARP ETLRDAYDCI RLNSNVSITE RNGSVAFDSI 101: AEELSSGVFD VASNTFSIVA RDKTKEVLVL PSVALKVVQE AIRIVLEVVF SPHFSKISHS CRSGRGRASA LKYINNNISR SDWCFTLSLN KKLDVSVFEN 201: LLSVMEEKVE DSSLSILLRS MFEARVLNLE FGGFPKGHGL PQEGVLSRVL MNIYLDRFDH EFYRISMRHE ALGLDSKTDE DSPGSKLRSW FRRQAGEQGL 301: KSTTEQDVAL RVYCCRFMDE IYFSVSGPKK VASDIRSEAI GFLRNSLHLD ITDETDPSPC EATSGLRVLG TLVRKNVRES PTVKAVHKLK EKVRLFALQK 401: EEAWTLGTVR IGKKWLGHGL KKVKESEIKG LADSNSTLSQ ISCHRKAGME TDHWYKILLR IWMEDVLRTS ADRSEEFVLS KHVVEPTVPQ ELRDAFYKFQ 501: NAAAAYVSSE TANLEALLPC PQSHDRPVFF GDVVAPTNAI GRRLYRYGLI TAKGYARSNS MLILLDTAQI IDWYSGLVRR WVIWYEGCSN FDEIKALIDN 601: QIRMSCIRTL AAKYRIHENE IEKRLDLELS TIPSAEDIEQ EIQHEKLDSP AFDRDEHLTY GLSNSGLCLL SLARLVSESR PCNCFVIGCS MAAPAVYTLH 701: AMERQKFPGW KTGFSVCIPS SLNGRRIGLC KQHLKDLYIG QISLQAVDFG AWR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)