suba logo
AT1G66410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:20843791 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin 4
Curator
Summary (TAIR10)
encodes a calmodulin
Computational
Description (TAIR10)
calmodulin 4 (CAM4); FUNCTIONS IN: calcium ion binding, signal transducer activity; INVOLVED IN: calcium-mediated signaling; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 33649 Blast hits to 23222 proteins in 1766 species: Archae - 3; Bacteria - 253; Metazoa - 14425; Fungi - 6839; Plants - 7076; Viruses - 0; Other Eukaryotes - 5053 (source: NCBI BLink).
Protein Annotations
BioGrid:19007BioGrid:28180eggNOG:COG5126eggNOG:KOG0027EMBL:AB016873EMBL:AB026662EMBL:AY048276
EMBL:AY059809EMBL:AY072520EMBL:AY072628EMBL:CP002684EMBL:CP002688EMBL:M38379EnsemblPlants:AT1G66410
EnsemblPlants:AT1G66410.1EnsemblPlants:AT5G37780.1entrez:833756entrez:842959ExpressionAtlas:P0DH95Gene3D:1.10.238.10GeneID:833756
GeneID:842959Genevisible:P0DH95GO:GO:0005509InParanoid:P0DH95InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
iPTMnet:P0DH95MINT:MINT-222511PaxDb:P0DH95Pfam:P0DH95Pfam:P0DH96Pfam:PF13499Pfscan:PS50222
PhylomeDB:P0DH95PIR:T50929PRIDE:P0DH95PRO:PR:P0DH95PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:P0DH95
Proteomes:UP000006548RefSeq:NP_176814.1RefSeq:NP_198594.1scanprosite:PS00018SMART:SM00054SMR:P0DH95STRING:3702.AT3G43810.1
SUPFAM:SSF47473TAIR:AT1G66410TAIR:AT5G37780tair10-symbols:ACAM-4tair10-symbols:CAM4UniGene:At.20495UniGene:At.23146
UniGene:At.294UniProt:P0DH95UniProt:P0DH96
Coordinates (TAIR10) chr1:-:24774431..24775785
Molecular Weight (calculated) 16862.70 Da
IEP (calculated) 3.89
GRAVY (calculated) -0.61
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)