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AT1G60420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DC1 domain-containing protein
Curator
Summary (TAIR10)
Reduce transmission through pollen.
Computational
Description (TAIR10)
DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60420-MONOMERBioGrid:27561EC:1.8.1.8eggNOG:ENOG410ZIWCeggNOG:KOG2501EMBL:AC004473EMBL:AY065433
EMBL:AY087396EMBL:AY117231EMBL:CP002684EnsemblPlants:AT1G60420EnsemblPlants:AT1G60420.1entrez:842337EvolutionaryTrace:O80763
Gene3D:3.40.30.10GeneID:842337Genevisible:O80763GO:GO:0005829GO:GO:0009860GO:GO:0010183GO:GO:0045454
GO:GO:0046686GO:GO:0047134GO:GO:0080092Gramene:AT1G60420.1gramene_pathway:1.8.1.9gramene_pathway:THIOREDOX-PWYhmmpanther:PTHR13871
hmmpanther:PTHR13871:SF7HOGENOM:HOG000240129InParanoid:O80763IntAct:O80763InterPro:IPR004146InterPro:IPR012336InterPro:IPR017937
KEGG:ath:AT1G60420KO:K17609ncoils:CoilOMA:CKECDFDPaxDb:O80763PDB:1V5NPDBsum:1V5N
Pfam:O80763Pfam:PF03107Pfam:PF07649Pfam:PF13905Pfscan:PS51352PhylomeDB:O80763PIR:T02292
PRIDE:O80763PRO:PR:O80763PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:O80763Proteomes:UP000006548RefSeq:NP_564756.1
scanprosite:PS00194SMR:O80763STRING:3702.AT1G60420.1SUPFAM:SSF52833SUPFAM:SSF57889TAIR:AT1G60420UniGene:At.10685
UniGene:At.64112UniProt:O80763
Coordinates (TAIR10) chr1:+:22261978..22264243
Molecular Weight (calculated) 65173.10 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.43
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)