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AT1G56510.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.723
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
TIR-NB-LRR protein that confers resistance to four races of Albugo candida.
Computational
Description (TAIR10)
WHITE RUST RESISTANCE 4 (WRR4); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 19205 Blast hits to 15135 proteins in 571 species: Archae - 14; Bacteria - 975; Metazoa - 1259; Fungi - 71; Plants - 16420; Viruses - 8; Other Eukaryotes - 458 (source: NCBI BLink).
Protein Annotations
EMBL:AC058785EMBL:AK226771EMBL:BT014857EMBL:CP002684EnsemblPlants:AT1G56510EnsemblPlants:AT1G56510.1entrez:842104
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:842104Genevisible:Q9C7X0GO:GO:0002229GO:GO:0005524
GO:GO:0005737GO:GO:0007165GO:GO:0009817GO:GO:0034644GO:GO:0043531Gramene:AT1G56510.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InParanoid:Q9C7X0InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR027417
InterPro:IPR032675KEGG:ath:AT1G56510OMA:ALMEISIPaxDb:Q9C7X0Pfam:PF00931Pfam:PF01582Pfam:PF07725
Pfscan:PS50104PhylomeDB:Q9C7X0PIR:G96606PRIDE:Q9C7X0PRO:PR:Q9C7X0PROSITE:PS50104ProteinModelPortal:Q9C7X0
Proteomes:UP000006548RefSeq:NP_176043.1SMART:SM00255STRING:3702.AT1G56510.1SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT1G56510tair10-symbols:ADR2tair10-symbols:WRR4UniGene:At.42767UniProt:Q9C7X0
Coordinates (TAIR10) chr1:+:21167704..21172260
Molecular Weight (calculated) 113984.00 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.10
Length 1007 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSPRN WRYNVFTSFH GPDVRIKFLS HLRQQFVYNG ITMFDDNGIE RSQIIAPALK KAIGESRVAI VLLSKNYASS SWCLDELLEI LKCKEYIGQI
0101: VMTVFYEVDP SHVRKQTGDF GIAFKETCAH KTEEERSKWS QALTYVGNIA GEDFIHWKDE AKMIEKIARD VSTKINVTPC RDFDDMVGLE RHLKEMVSLL
0201: DLDKEGVKMV GISGPAGIGK STIAKALHSR HSSTFQHNCF VDNLWENYKI CTGEHGVKLR LHEQFVSKIL KQNGLELTHL SVIKDRLQDK KVLIILDDVE
0301: SLAQLETLAD MTWFGPGSRV IVTTENKEIL QQHGIGDIYQ VGYPSESEAL TIFCLSAFKQ ASPPDGFMDL ADEVVRICDK LPLALCVLGS SLLRKSQTDW
0401: EDELPRLRNC LDGIESVLKV GFESLNEKDQ ALFLYITVFF NYECADHVTL MLAKSNLNVR LGLKNLANRY LIHIDHDQKK RVVVHRLLRV MAIQVCTKQK
0501: PWKSQILVDA EKIAYVLEEA TGNRSIKGVS FDTAEIDELM ISPKAFEKMC NLLFLKVYDA GWHTGKRKLD IPEDIKFPRT IRLFHWDAYS GKRLPSSFFA
0601: ENLVEVNMQD SELQKLWEGT QCLANLKKID LSRSSCLTEL PDLSNATNLE DLYVGSCTAL VELPSSIGNL HKLAHIMMYS CESLEVIPSL INLTSLTFLN
0701: MNKCSRLRRF PDIPTSIEDV QVTGTTLEEL PASLTHCSGL QTIKISGSVN LKIFYTELPV SVSHINISNS GIEWITEDCI KGLHNLHDLC LSGCKRLVSL
0801: PELPRSLKIL QADDCDSLES LNGHLNTPNA ELYFANCFKL DAEARRAIIQ QSFVSGWALL PGLEVPPEFG HRARGNSLII PYSASNRFKV CVVMSLNHHQ
0901: PFELVPRNLL YRWTVIGDSV SSDEKTFHLS HMFNADSVNS KLQKPHLFIF HSCLPFIFHS CLPFIFDISN IMLEFSSEYK DFDILECGVQ ILTDETDERN
1001: IWGSLVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)