AT1G56510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.723 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
TIR-NB-LRR protein that confers resistance to four races of Albugo candida. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
WHITE RUST RESISTANCE 4 (WRR4); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 19205 Blast hits to 15135 proteins in 571 species: Archae - 14; Bacteria - 975; Metazoa - 1259; Fungi - 71; Plants - 16420; Viruses - 8; Other Eukaryotes - 458 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21167704..21172260 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113984.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1007 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSPRN WRYNVFTSFH GPDVRIKFLS HLRQQFVYNG ITMFDDNGIE RSQIIAPALK KAIGESRVAI VLLSKNYASS SWCLDELLEI LKCKEYIGQI 0101: VMTVFYEVDP SHVRKQTGDF GIAFKETCAH KTEEERSKWS QALTYVGNIA GEDFIHWKDE AKMIEKIARD VSTKINVTPC RDFDDMVGLE RHLKEMVSLL 0201: DLDKEGVKMV GISGPAGIGK STIAKALHSR HSSTFQHNCF VDNLWENYKI CTGEHGVKLR LHEQFVSKIL KQNGLELTHL SVIKDRLQDK KVLIILDDVE 0301: SLAQLETLAD MTWFGPGSRV IVTTENKEIL QQHGIGDIYQ VGYPSESEAL TIFCLSAFKQ ASPPDGFMDL ADEVVRICDK LPLALCVLGS SLLRKSQTDW 0401: EDELPRLRNC LDGIESVLKV GFESLNEKDQ ALFLYITVFF NYECADHVTL MLAKSNLNVR LGLKNLANRY LIHIDHDQKK RVVVHRLLRV MAIQVCTKQK 0501: PWKSQILVDA EKIAYVLEEA TGNRSIKGVS FDTAEIDELM ISPKAFEKMC NLLFLKVYDA GWHTGKRKLD IPEDIKFPRT IRLFHWDAYS GKRLPSSFFA 0601: ENLVEVNMQD SELQKLWEGT QCLANLKKID LSRSSCLTEL PDLSNATNLE DLYVGSCTAL VELPSSIGNL HKLAHIMMYS CESLEVIPSL INLTSLTFLN 0701: MNKCSRLRRF PDIPTSIEDV QVTGTTLEEL PASLTHCSGL QTIKISGSVN LKIFYTELPV SVSHINISNS GIEWITEDCI KGLHNLHDLC LSGCKRLVSL 0801: PELPRSLKIL QADDCDSLES LNGHLNTPNA ELYFANCFKL DAEARRAIIQ QSFVSGWALL PGLEVPPEFG HRARGNSLII PYSASNRFKV CVVMSLNHHQ 0901: PFELVPRNLL YRWTVIGDSV SSDEKTFHLS HMFNADSVNS KLQKPHLFIF HSCLPFIFHS CLPFIFDISN IMLEFSSEYK DFDILECGVQ ILTDETDERN 1001: IWGSLVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)