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AT1G53430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
TAIR : plasma membrane 17317660
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53440.1); Has 190391 Blast hits to 136728 proteins in 4882 species: Archae - 123; Bacteria - 17099; Metazoa - 53964; Fungi - 11192; Plants - 85200; Viruses - 463; Other Eukaryotes - 22350 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53430-MONOMERBioCyc:ARA:GQT-308-MONOMERBioGrid:27003EC:2.7.11.1eggNOG:COG4886eggNOG:ENOG410IFCUEMBL:AC018748
EMBL:AF083693EMBL:CP002684EMBL:FJ708657EnsemblPlants:AT1G53430EnsemblPlants:AT1G53430.1entrez:841778ExpressionAtlas:C0LGG8
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:841778Genevisible:C0LGG8GO:GO:0004674GO:GO:0005524GO:GO:0005886
GO:GO:0016021Gramene:AT1G53430.1hmmpanther:PTHR27006hmmpanther:PTHR27006:SF35HOGENOM:HOG000116550InParanoid:C0LGG8InterPro:IPR000719
InterPro:IPR001245InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320InterPro:IPR021720
InterPro:IPR032675iPTMnet:C0LGG8PaxDb:C0LGG8Pfam:C0LGG8Pfam:PF00560Pfam:PF07714Pfam:PF11721
Pfam:PF13855Pfscan:PS50011PhylomeDB:C0LGG8PIR:C96574PRIDE:C0LGG8PRO:PR:C0LGG8PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:C0LGG8Proteomes:UP000006548RefSeq:NP_175748.1scanprosite:PS00108SMART:SM00220SMART:SM00369
SMR:C0LGG8STRING:3702.AT1G53430.1SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G53430TMHMM:TMhelix
UniGene:At.21553UniProt:C0LGG8
Coordinates (TAIR10) chr1:+:19935298..19940959
Molecular Weight (calculated) 113983.00 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.20
Length 1030 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGFIFSTEKV VYVLLLIFVC LENFGSNAQL LPEDEVQTLR TIFRKLQNQT VNIERTSCSD QNWNFVVESA SNSPTSNITC DCTFNASSVC RVTNIQLKSF
0101: SLPGIFPPEF GNLTRLREID LSRNFLNGTI PTTLSQIPLE ILSVIGNRLS GPFPPQLGDI TTLTDVNLET NLFTGPLPRN LGNLRSLKEL LLSANNFTGQ
0201: IPESLSNLKN LTEFRIDGNS LSGKIPDFIG NWTLLERLDL QGTSMEGPIP PSISNLTNLT ELRITDLRGQ AAFSFPDLRN LMKMKRLGPI PEYIGSMSEL
0301: KTLDLSSNML TGVIPDTFRN LDAFNFMFLN NNSLTGPVPQ FIINSKENLD LSDNNFTQPP TLSCNQLDVN LISSYPSVTD NSVQWCLREG LPCPEDAKQS
0401: SLFINCGGSR LKIGKDTYTD DLNSRGQSTF SSVSERWGYS SSGVWLGKED AGYLATDRFN LINGSTPEYY KTARLSPQSL KYYGLCLRRG SYKLQLHFAE
0501: IMFSNDQTFN SLGRRIFDIY VQGNLLERDF NIAERAGGVG KPFIRQIDGV QVNGSTLEIH LQWTGKGTNV IPTRGVYGPL ISAITITPNF KVDTGKPLSN
0601: GAVAGIVIAA CAVFGLLVLV ILRLTGYLGG KEVDENEELR GLDLQTGSFT LKQIKRATNN FDPENKIGEG GFGPVYKGVL ADGMTIAVKQ LSSKSKQGNR
0701: EFVTEIGMIS ALQHPNLVKL YGCCIEGKEL LLVYEYLENN SLARALFGTE KQRLHLDWST RNKICIGIAK GLAYLHEESR LKIVHRDIKA TNVLLDLSLN
0801: AKISDFGLAK LNDDENTHIS TRIAGTIGYM APEYAMRGYL TDKADVYSFG VVCLEIVSGK SNTNYRPKEE FVYLLDWAYV LQEQGSLLEL VDPDLGTSFS
0901: KKEAMRMLNI ALLCTNPSPT LRPPMSSVVS MLEGKIKVQP PLVKREADPS GSAAMRFKAL ELLSQDSESQ VSTYARNREQ DISSSSMDGP WVDSSFSEPG
1001: KDVSLQQQEE GRSSSSSRKL LDDLTDVKIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)