AT1G53380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF641) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19913341..19914702 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52282.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METVRPMVVA PKGNKLRRKF AKVLNIHKLT GVAPEGEMKK IKFDSKTAKL SESFYKLEEE YERSQGLEAL LAKLFATVSS IKAAYAQLQH SQSPYDSIGI 101: QKADNLVVAE LKTLSELKQC FMKKQVDPNP ERTLVLAEIQ ELRSLLKTYE IMGKKLESQY KLKDSEIIFL REKLDESMKQ NKLTEKRLNQ SGQLCNPLDN 201: LHLSALNPTH FVTYLHHTVK STRGFVKLMI EQMKLAGWDI SSAANSIHPG VFYYKQDHKC FTFEHFVSNV MFEAFHLPYF STSSESRSYK KKKQSNADRE 301: MFFERFKELR SMKAKDYLTA RPKSRFARFC RAKYLQLIHP KMEQAFFGHL HLRNQVSAGE FPETSLFSGF LEMAKRIWLL HCLALSFERE AEIFRVPKGC 401: RFSEVYMKSV AEEAFFPAAE SSPESEPRVA FTVVPGFRIG KTSIQCEVYL SLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)