AT1G51270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.508 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural molecules;transmembrane receptors;structural molecules | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 2812 Blast hits to 2401 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 192; Plants - 2224; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19007577..19010411 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64410.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 571 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTDELLTFD HVDIRFPIEL NKQGSCSLNL TNKTDNYVAF KAQTTKPKMY CVKPSVGVVL PRSSCEVLVV MQALKEAPAD RQCKDKLLFQ CKVVEPGTMD 101: KEVTSEMFSK EAGHRVEETI FKIIYVAPPQ PQSPVQEGLE DGSSPSASVS DKGNASEVFV GPSVGIVDLI RMSDELLIID PVDVQFPIEL NKKVSCSLNL 201: TNKTENYVAF KAKTTNAKKY YVRPNVGVVL PRSSCEVLVI MQALKEAPAD MQCRDKLLFQ CKVVEPETTA KDVTSEMFSK EAGHPAEETR LKVMYVTPPQ 301: PPSPVQEGTE EGSSPRASVS DNGNASEAFV DMLRSLLVPL FSNAASSTDD HGITLPQYQV FINFRGDELR NSFVGFLVKA MRLEKINVFT DEVELRGTNL 401: NYLFRRIEES RVAVAIFSER YTESCWCLDE LVKMKEQMEQ GKLVVVPVFY RLNATACKRF MGAFGDNLRN LEWEYRSEPE RIQKWKEALS SVFSNIGLTS 501: DIRRYNLINK NMDHTSEFLY IVLILNFFSE ISDMTGLTTS YQFLLMMKSN LISYDIYIYP TKFCVNVFIG V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)