AT5G25910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 52 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative disease resistance protein induced by chitin oligomers. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
receptor like protein 52 (RLP52); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response to fungus, response to chitin, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT5G25930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9038860..9041377 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90361.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 811 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFLPLLFIF FFLTSIPFPA FSQYNDRSTL LNLKRDLGDP LSLRLWNDTS SPCNWPRITC TAGNVTEINF QNQNFTGTVP TTICNFPNLK SLNLSFNYFA 101: GEFPTVLYNC TKLQYLDLSQ NLFNGSLPDD INRLAPKLKY LDLAANSFAG DIPKNIGRIS KLKVLNLYMS EYDGTFPSEI GDLSELEELQ LALNDKFTPV 201: KLPTEFGKLK KLKYMWLEEM NLIGEISAVV FENMTDLKHV DLSVNNLTGR IPDVLFGLKN LTELYLFAND LTGEIPKSIS AKNLVHLDLS ANNLNGSIPE 301: SIGNLTNLEL LYLFVNELTG EIPRAIGKLP ELKELKLFTN KLTGEIPAEI GFISKLERFE VSENQLTGKL PENLCHGGKL QSVIVYSNNL TGEIPESLGD 401: CETLSSVLLQ NNGFSGSVTI SNNTRSNNNF TGKIPSFICE LHSLILLDLS TNKFNGSIPR CIANLSTLEV LNLGKNHLSG SIPENISTSV KSIDIGHNQL 501: AGKLPRSLVR ISSLEVLNVE SNKINDTFPF WLDSMQQLQV LVLRSNAFHG SINQNGFSKL RIIDISGNHF NGTLPLDFFV NWTAMFSLGK IEDQYMGTNY 601: MRTNYYSDSI VVMIKGIALE MVRILNTFTT IDFSGNKFEG EIPRSVGLLK ELHVLNLSNN GFTGHIPSSM GNLIELESLD VSQNKLSGEI PPELGKLSYL 701: AYMNFSQNQF VGLVPGGTQF QTQPCSSFAD NPRLFGLSLE RVCVDIHKKT PQQSEMPEPE EDEEEVMNWT AAAIGSIPGI SIGLTMGYIL VSYKPEWLMN 801: SGRNKRRIKP I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)