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AT1G49510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 1273
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1273 (emb1273); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYKCeggNOG:ENOG410YIS3EMBL:AC007504EMBL:AK227372EMBL:BT005857EMBL:CP002684EnsemblPlants:AT1G49510
EnsemblPlants:AT1G49510.1entrez:841375GeneID:841375GO:GO:0016021Gramene:AT1G49510.1hmmpanther:PTHR36000hmmpanther:PTHR36000:SF2
HOGENOM:HOG000093086KEGG:ath:AT1G49510OMA:YPYWGRIPhylomeDB:Q9XIB8PIR:H96531Proteomes:UP000006548RefSeq:NP_175374.2
TAIR:AT1G49510tair10-symbols:emb1273TMHMM:TMhelixUniGene:At.23203UniGene:At.67121UniProt:Q9XIB8
Coordinates (TAIR10) chr1:+:18327026..18328147
Molecular Weight (calculated) 27383.60 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.01
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSHLFLSS SPQSSLALRL HSTTQFTLSY SKNNKDCSFQ SANEAKVSKR SLLCRAIHME SGHSGEQPKK LNFDNLLRRT KHVWDNSPQP VKEFPWNRAF
101: GNFIQLVLDL AISVVKFLFV PILAVSSISE MSYCAHERKL ALVPFPLVIG MVVAGVLQET ALKISPRLKE AEVPWHLIAM MMFFTLIKLP GPYYPYWGRL
201: LVPHFANGVL LRALWSMFFW YKKTRNTSGN PLQNHSLETE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)