AT1G43690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin interaction motif-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16478519..16482589 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65467.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADHQEDEDL KLALKMSMQY NPPEPKRSKP IEEEETGSGS QSGGESPEAK SRRLQRELMA AAAEKRMVLF PKSPSPVNKA RVLPISVVGG DKDEEVVGSC 101: LGKELSVEES DQLFSIVFGN EVSKSVLAQW TNQGIRFSPD PETTIGLVQH EGGPCGVLAA LQAFVLKYLL YFPGDRVASP CMGVWTLSKD RHVVSDSFSS 201: VTEEAKTKAL VRSMCEILFM CGDNNRAVIA SFTNFEDSSS NQKDEAMAGG LPIESASDLQ KILRFETFTT QASAQNKLEG TITAFQSRMG ALLFLISALL 301: SRGLDSVQAD RDDPNLPLVT APFGHASQEI VNLLLCGEAV PNVFDGRMDL GGGMFLKGIS KNVDVGFLTL LESLNFCKVG QNLKCPKWPI WVIGSESHYT 401: VLFALDPSVQ EENELELRES QIRRAFDARD QSGGGGFITV EAFHQVAQET NIRLPIKKLD DICATGFIVW SELWQVILEL DQNLGGIKDA TGLMGKKVFD 501: IYHFNGIAKS DINGGGQAMA VEGGMVPMQR PRLTKLNVSV PPKWTPEEYM TCALPPSSSE KDSEVNQPKP VQHAPLVDCI RTRWSRAACS WSGDPPSIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)