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AT1G27300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.808
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4FPeggNOG:ENOG410Y1ZEEMBL:AC004557EMBL:AY054537EMBL:AY064655EMBL:CP002684EnsemblPlants:AT1G27300
EnsemblPlants:AT1G27300.1entrez:839619GeneID:839619GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016021
Gramene:AT1G27300.1hmmpanther:PTHR35280HOGENOM:HOG000006389KEGG:ath:AT1G27300ncoils:CoilOMA:AVWQFNEProteomes:UP000006548
RefSeq:NP_564275.1STRING:3702.AT1G27300.1TAIR:AT1G27300TMHMM:TMhelixUniGene:At.48239UniGene:At.66864UniProt:Q9FZK5
Coordinates (TAIR10) chr1:+:9483324..9484194
Molecular Weight (calculated) 22421.30 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.78
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)