AT1G26900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 36640 Blast hits to 13575 proteins in 201 species: Archae - 0; Bacteria - 9; Metazoa - 54; Fungi - 45; Plants - 36058; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9319756..9321474 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63590.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLAITSRLR RNFVFRRRNL ESLLSPQCQK LINDLRSCRD TVEVSRIHGY MVKTGLDKDD FAVSKLLAFS SVLDIRYASS IFEHVSNTNL FMFNTMIRGY 101: SISDEPERAF SVFNQLRAKG LTLDRFSFIT TLKSCSRELC VSIGEGLHGI ALRSGFMVFT DLRNALIHFY CVCGKISDAR KVFDEMPQSV DAVTFSTLMN 201: GYLQVSKKAL ALDLFRIMRK SEVVVNVSTL LSFLSAISDL GDLSGAESAH VLCIKIGLDL DLHLITALIG MYGKTGGISS ARRIFDCAIR KDVVTWNCMI 301: DQYAKTGLLE ECVWLLRQMK YEKMKPNSST FVGLLSSCAY SEAAFVGRTV ADLLEEERIA LDAILGTALV DMYAKVGLLE KAVEIFNRMK DKDVKSWTAM 401: ISGYGAHGLA REAVTLFNKM EEENCKVRPN EITFLVVLNA CSHGGLVMEG IRCFKRMVEA YSFTPKVEHY GCVVDLLGRA GQLEEAYELI RNLPITSDST 501: AWRALLAACR VYGNADLGES VMMRLAEMGE THPADAILLA GTHAVAGNPE KSLDNELNKG RKEAGYSAIE IE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)