AT2G21090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 41491 Blast hits to 14018 proteins in 251 species: Archae - 0; Bacteria - 11; Metazoa - 98; Fungi - 122; Plants - 40599; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9045695..9047488 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67522.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPISNPRKRP ICVAQSFLSK HATKAELSQA VSRLESLTQQ GIRLPFDLLA SLLQQCGDTK SLKQGKWIHR HLKITGFKRP NTLLSNHLIG MYMKCGKPID 101: ACKVFDQMHL RNLYSWNNMV SGYVKSGMLV RARVVFDSMP ERDVVSWNTM VIGYAQDGNL HEALWFYKEF RRSGIKFNEF SFAGLLTACV KSRQLQLNRQ 201: AHGQVLVAGF LSNVVLSCSI IDAYAKCGQM ESAKRCFDEM TVKDIHIWTT LISGYAKLGD MEAAEKLFCE MPEKNPVSWT ALIAGYVRQG SGNRALDLFR 301: KMIALGVKPE QFTFSSCLCA SASIASLRHG KEIHGYMIRT NVRPNAIVIS SLIDMYSKSG SLEASERVFR ICDDKHDCVF WNTMISALAQ HGLGHKALRM 401: LDDMIKFRVQ PNRTTLVVIL NACSHSGLVE EGLRWFESMT VQHGIVPDQE HYACLIDLLG RAGCFKELMR KIEEMPFEPD KHIWNAILGV CRIHGNEELG 501: KKAADELIKL DPESSAPYIL LSSIYADHGK WELVEKLRGV MKKRRVNKEK AVSWIEIEKK VEAFTVSDGS HAHARKEEIY FILHNLAAVI EEEASRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)