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AT1G23180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 2470 Blast hits to 1640 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 372; Plants - 1309; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITM0eggNOG:ENOG410YAE4EMBL:AK226976EMBL:BT002042EMBL:BT008799EMBL:CP002684EnsemblPlants:AT1G23180
EnsemblPlants:AT1G23180.1entrez:838926Gene3D:1.25.10.10GeneID:838926GO:GO:0009507GO:GO:0009570Gramene:AT1G23180.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF90HOGENOM:HOG000029826InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT1G23180
ncoils:CoilOMA:INMEVTLPfam:PF00514Pfscan:PS50176PhylomeDB:Q8H0U3ProMEX:Q8H0U3PROSITE:PS50176
Proteomes:UP000006548RefSeq:NP_173731.2SMART:SM00185SMR:Q8H0U3SUPFAM:SSF48371TAIR:AT1G23180UniGene:At.43289
UniGene:At.50936UniProt:Q8H0U3
Coordinates (TAIR10) chr1:+:8216125..8219515
Molecular Weight (calculated) 91698.90 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.01
Length 834 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSTIASGI GVLELPCLRL LPISSTQIQF LTVEARKQSR RIRRERSFSP FPVLIQSNRR LRHGFSELNS SFDRSNSGET GSDTTLKDGE EVRSESSSGV
101: GDSYVGLFVG MLGLDNDPLD REQAIETLWK YSLGGKKCID AIMQFHGCLN LIVNLLKSES SSACEAAAGL IRSIASVNLY RESVAESGAL EEITALLSRP
201: SLATVVKEQC ICALWNLTVD EEIREKVADF DILRLLISFL EDDDVNVKEA AGGVLANLAL SRSTHKILVE VGVIPKLAKL LKADNTENKG SKVIRKEARN
301: VLLELAKDEY YRILVIEEGV VPIPIIGADA YKSFRPDLYS WPSLPDGINI EQTAKAPSRF GASELLLGLN VDKNVDDVDE AKMKAIVGRT NQQFLARIGA
401: IEFEKEIKSE GPGKSQQLTL LPCVDGVARL VLILGLADEL AATRAAESIA DASINEDMRV SFMEAGAVKP LVQLLANNNK ETVKLPVIRA LKNLSLSRTV
501: CQRIEAEGAV WFLINLLKQP EISLNVTEHV LDIIAHILDP SKEMESKFYE GPVNGSKADS RKEVLDAAVF SRLVQIAKTA SPNLLRNAIS VIEFGIISNP
601: NMDTIISKDI TTVLDLALRQ KVLEEPENEA EELEKHLLKL EEAGLTISAA SRLLTKLLDS ESFRQTIDTA VFIELVRKIL RSSLPLHYKD WVAACLVKLT
701: ALSSPSQSLN NPINLEVTLY KTIPSLVEQM SFSSSPETKE AAVLELNKIV SEGVPESIQT LASQGGIEPL VKLLEERNER CVEASLSVLY NLTMDSENHT
801: AIIRAGAVPV LRRIVMSQRP QWEKALRLLR NLPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)