AT3G10270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA GYRASE B1 | ||||||||||||
| Curator Summary (TAIR10) |
Protein targeting to mitochondria is influenced by UTR sequences. | ||||||||||||
| Computational Description (TAIR10) |
DNA GYRASE B1 (GYRB1); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 32428 Blast hits to 29720 proteins in 6857 species: Archae - 109; Bacteria - 22797; Metazoa - 200; Fungi - 238; Plants - 123; Viruses - 106; Other Eukaryotes - 8855 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3173805..3179756 | ||||||||||||
| Molecular Weight (calculated) | 85854.80 Da | ||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||
| Length | 772 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTVTINSS MALVQRQHSY LLRYFRLMAS RPRPRLFSHS LYPSLHRHSS ALSSSTPRIK FQLANVFSQR LVQRNAVSPK SFMSSTMESL QESSTSKDYS 101: SEHIQVLEGL DPVRKRPGMY IGSTGSRGLH HLVYEILDNA IDEAQAGFAS KIDVVLHSDD SVSISDNGRG IPTDLHPATG KSSLETVLTV LHAGGKFGGK 201: SSGYSVSGGL HGVGLSVVNA LSEALEVIVR RDGMEFQQKY SRGKPVTTLT CHVLPPESRG TQGTCIRFWP DKEVFTTAIQ FDHNTIAGRI RELAFLNPKV 301: TISLKKEDDD PERDVYSEYF YAGGLTEYVS WLNTDKKPLH DVLGFRKEIN GSTVDVSLQW CSDAYSDTML GYANSIRTID GGTHIEGVKA SLTRTLNSLA 401: KKLKVIKVKG YIIYSSPWIE TKFKYSSALK RHALRTINNE KDISLSGEHV REGLTCIVSV KVPNPEFEGQ TKTRLGNPEV RKIVDQSVQE YLTEYLELHP 501: DVLESIISKS LNAYKAALAA KRARELVRSK SVLKSSSLPG KLADCSSTDP AESEIFIVEG DSAGGSAKQG RDRRFQAILP LRGKILNIER KDEAAMYKNE 601: EIQNLILGLG LGVKGEDFNK ENLRYHKIII LTDADVDGAH IRTLLLTFFF RYQRALFDAG CIYVGVPPLF KVERGKQAHY CYDDAALKKI TASFPGNASY 701: NIQRFKGLGE MMPAQLWETT MNPDTRILKQ LVVDDAAETN MVFSSLMGAR VDVRKELIKS AATRMNLENL DI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)