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AT1G13470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.920
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1262)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:837907eggNOG:ENOG410IKBXeggNOG:ENOG410YFJ1EMBL:CP002684EnsemblPlants:AT1G13470EnsemblPlants:AT1G13470.1entrez:837907
GeneID:837907Gramene:AT1G13470.1hmmpanther:PTHR31050hmmpanther:PTHR31050:SF2InParanoid:F4HQT8InterPro:IPR010683KEGG:ath:AT1G13470
OMA:CKERDIRPaxDb:F4HQT8Pfam:PF06880PRIDE:F4HQT8ProteinModelPortal:F4HQT8Proteomes:UP000006548RefSeq:NP_172804.2
STRING:3702.AT1G13470.1TAIR:AT1G13470UniGene:At.42028UniProt:F4HQT8
Coordinates (TAIR10) chr1:-:4620322..4621542
Molecular Weight (calculated) 44097.10 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.64
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVTRRLSEY QRNRSELPES PNSGVLIIQD EESRPTCCFG SCYRATLKGL PFPQNANLIV SESRIFLNQT ITYIDPVVFI PVLDQPLSSN RYYVIKRGGK
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)