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AT1G12440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 1075 Blast hits to 1057 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 9; Plants - 482; Viruses - 6; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
BioGrid:23041eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AC025416EMBL:BT010824EMBL:BT011299EMBL:CP002684
EnsemblPlants:AT1G12440EnsemblPlants:AT1G12440.1EnsemblPlants:AT1G12440.2entrez:837801EvolutionaryTrace:Q6NNI8Gene3D:4.10.1110.10GeneID:837801
GO:GO:0003677GO:GO:0008270Gramene:AT1G12440.1Gramene:AT1G12440.2hmmpanther:PTHR10634hmmpanther:PTHR10634:SF38HOGENOM:HOG000238229
InParanoid:Q6NNI8IntAct:Q6NNI8InterPro:IPR000058InterPro:IPR002653KEGG:ath:AT1G12440MINT:MINT-8063464OMA:CYRDIRA
PaxDb:Q6NNI8PDB:1WFPPDBsum:1WFPPfam:PF01428Pfam:PF01754Pfam:Q6NNI8Pfscan:PS51036
Pfscan:PS51039PhylomeDB:Q6NNI8PRIDE:Q6NNI8PRO:PR:Q6NNI8PROSITE:PS51036PROSITE:PS51039ProteinModelPortal:Q6NNI8
Proteomes:UP000006548RefSeq:NP_172706.1RefSeq:NP_849652.1SMART:SM00154SMART:SM00259SMR:Q6NNI8STRING:3702.AT1G12440.1
SUPFAM:SSF118310SUPFAM:SSF57716TAIR:AT1G12440UniGene:At.15271UniProt:Q6NNI8
Coordinates (TAIR10) chr1:-:4241816..4242322
Molecular Weight (calculated) 17820.90 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.64
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEQNDSTS FSPSEPKLCV KGCGFFGSPS NMNLCSKCYR DIRATEEQTA SAKAAVEKSL NPNKPKTQPQ QSQEITQGVL GSGSSSSSTR GGDSAAAPLD
101: PPKSTATRCL SCNKKVGVTG FKCRCGSTFC GTHRYPESHE CQFDFKGVAR EAIAKANPVV KADKVDRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)