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AT4G27880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT3G61790.1); Has 1768 Blast hits to 1750 proteins in 698 species: Archae - 0; Bacteria - 0; Metazoa - 1225; Fungi - 9; Plants - 484; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002EMBL:BT033078
EnsemblPlants:AT4G27880EnsemblPlants:AT4G27880.1entrez:828901ExpressionAtlas:B3LF90
Gene3D:2.60.210.10Gene3D:3.30.40.10Gene3D:3.90.890.10GeneID:828901
GO:GO:0004842GO:GO:0005634GO:GO:0006511GO:GO:0007275
GO:GO:0008270GO:GO:0016874Gramene:AT4G27880.1hmmpanther:PTHR10315
hmmpanther:PTHR10315:SF34InterPro:IPR001841InterPro:IPR004162InterPro:IPR008974
InterPro:IPR013010InterPro:IPR013083InterPro:IPR013323InterPro:IPR018121
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT4G27880
KO:K04506OMA:ETDSMECPANTHER:PTHR10315PaxDb:B3LF90
Pfam:PF03145Pfam:Q9STN8Pfscan:PS50089Pfscan:PS51081
PhylomeDB:B3LF90PRIDE:B3LF90PROSITE:PS50089PROSITE:PS51081
ProteinModelPortal:B3LF90RefSeq:NP_194517.1SMR:B3LF90STRING:3702.AT4G27880.1
SUPFAM:SSF49599SUPFAM:SSF57850TAIR:AT4G27880UniGene:At.32065
UniPathway:UPA00143UniProt:B3LF90UniProt:Q9STN8
Coordinates (TAIR10) chr4:+:13883623..13884927
Molecular Weight (calculated) 36576.40 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.37
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)