AT1G10410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1336) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1336); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT1G59650.1); Has 292 Blast hits to 292 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 234; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3416842..3419264 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 54875.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGCVSTPKS CVGAKLRSSK RRKSRRRRKI QRKRAAVSSR LSDGSFDNLD HHHRNFSNPS SRATGEDAWF ESNVAFETDC DDDFHSVHED ALSLNGSERV 101: SLSSTTTTSS TRDTDSNEVM SQSKSDGDLN DTNQPDLIDS SADEGLLENC RILPSNCLPC LNTTTVPSID KRRSLSSSPP SSRKKSSLRL SYKWREGHAS 201: GALFLSKMQL KRPIAGSQVP FCPIDKKMLD CWSTIDPNSF RVRGKTYLRE KKKEFAPSHA AYNPFGVDVF LSEHKIHHVA QYVKLPVTTT STKLPSILVV 301: NVQIPLYPTA IFQGESDGEG MNIVLYFKLS DNYSKELPLH FQESIRRLID DEVEKVKGFP LDTTAPFRER LKILGRVANV DDLHLSGPEK KLMQAYNEKP 401: VLSRPQHEFY LGDNYFEIDI DMHRFGYISR KGFETFIDRL KICVLDVGLT IQGNKPEELP EQILCCVRLN GIDFMNYHQL TQELL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)