AT5G56190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.493 nucleus 0.452 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 22501 Blast hits to 10717 proteins in 548 species: Archae - 84; Bacteria - 7160; Metazoa - 5614; Fungi - 4737; Plants - 1943; Viruses - 0; Other Eukaryotes - 2963 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22742563..22744909 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49687.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADFDEYMAD EYDMDDLEDD MNAAFDGRDI DASDSEVEDF DQLNKAADTS AAQARNGKDI QGIPWDSLTL TRKDYRKTRL EQYKNYENIP NSGDESAKKC 101: MNTEKGSSFY EFRRNSRSVR STILHFQLRN LVWATSKHDV YLLSNYSISH WSSLTGCRSE ILNVKGHVAP SEKHPESLLE GFTETQVSTL AVKERLLVAG 201: GFQGELICKH LDRPGVSFCS RTTYTENAIT NAVDIYRNSS GALHFMASNN DCGVRDFDME RYKLVQLFRY LWPVNHSSLS PDGKLVAVVG DDPDGLLVDT 301: SNGQTIGTLK GHLDYSFASA WHPNGVTFAT GNQDKTCRIW DTRKLSESVA VLKGNLGAVR SIRFTSDGRY VAMAEPADFV HIYDTKSGYK KEQEIDFFGE 401: ISGISFSPDT ESLFIGVWDR TYGSLLEYGR TRDYTYLDSL L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)