AT1G07705.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NOT2 / NOT3 / NOT5 family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0; Bacteria - 989; Metazoa - 670; Fungi - 343; Plants - 147; Viruses - 8; Other Eukaryotes - 701 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:2382090..2385282 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57409.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLLNSSIN GSTSNLSDGS GRTFTSSFSG QSGAASPVFH HAGSIQGLHN IHGNFNVPNL AGSLGSRNSS LNGVPSAGVQ QQNGSISNGR FASSNIPVAL 101: SQMSHGSSHG HSGLTNRGGL GVSPILGNVG SRMTSSMGNM VGGGTMGRTL SSGGGLSIPS LGSRLNLAVN SGSGNIGQNR MMGGVLPQGS PQVLSMLGNS 201: YPSAGGLSQN HVQAMNSLSS MGLLNDMNSN DTSPFDINND FPQLTSRPSS AGSQGQLGSR LKQGLGISPI VQQNQEFSIQ NEDFPALPGY KGSSADYPMD 301: LHHKEQLHEN SVLMMQSQQL SMGRSGGFNL GGAYTSHRPQ QQQQHAQAVS SSGVSLHGSD IFSSSHPPYH SQTGGAPGIG LRSMNSANSI TGMGYDQQLI 401: QQYQHQQNSA QYRLQQMSAA SQPFRDVGLK SMQSTQSNPD RFGLLGLLSV IKMSDPDLTS LALGIDLTTL GLNLNSTENL HKTFGSPWSN EPSKVDPEFS 501: VPQCYYAKNP PPLHQGLFAK LLVETLFYVF YSMPKDEAQL YAANEL |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)