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AT1G06190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rho termination factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).
Protein Annotations
BioGrid:22370eggNOG:ENOG410ISMJeggNOG:ENOG410YIZQEMBL:AC025290EMBL:AF370238EMBL:AY062959EMBL:AY084647
EMBL:CP002684EnsemblPlants:AT1G06190EnsemblPlants:AT1G06190.1entrez:837128GeneID:837128Genevisible:Q94K75GO:GO:0006353
GO:GO:0009507GO:GO:0009737GO:GO:0010239GO:GO:0019843GO:GO:0043621GO:GO:1901259hmmpanther:PTHR34449
hmmpanther:PTHR34449:SF2HOGENOM:HOG000015123InParanoid:Q94K75InterPro:IPR011112iPTMnet:Q94K75KEGG:ath:AT1G06190ncoils:Coil
OMA:NRQSSTIPaxDb:Q94K75Pfam:PF07498Pfam:Q94K75PhylomeDB:Q94K75PIR:E86197PRIDE:Q94K75
PRO:PR:Q94K75ProteinModelPortal:Q94K75Proteomes:UP000006548RefSeq:NP_001077466.1RefSeq:NP_563761.1SMART:SM00959STRING:3702.AT1G06190.1
TAIR:AT1G06190UniGene:At.15474UniProt:Q94K75
Coordinates (TAIR10) chr1:-:1892467..1894078
Molecular Weight (calculated) 44531.90 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.98
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSGTFHLT SDYVPGYTLS DSRCFFNSAV SRRTLAILPC SSCLDHKNGR LKSVPNRSSF VCRASSGGYR RNPDFSRLNK HGYRGNNRQS GGREDFDIEN
101: SDMLSSRNGP LFNLSSSPKF QATSSPGPRE KEIVELFRKV QAQLRARAAA KKEEKKIEEA SKGQGKESET VDSLLKLLRK HSGEQSKRQV SKFSSQGEVQ
201: GDTVDKQDRT GNLVTSGNKD NNASSFTRPT SSFRRKSPVP RSQSPPAYSS EATFDQSSSY SVTWTQKKDT VELHDEPEHE PAYEHEHEPE NESEPGPVTT
301: MLEPDSELKP ESSSFYQEEE DDDVTFDVLS QDDGILDVLS DDDESLDDAD EDSDEAEEEA VKDLSELKLV ELRGIAKSRG LKGLSKMKKA ELVELLGSDS
401: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)